EA2106

Transcriptomic resources

Web Link http://medicinalplantgenomics.msu.edu/

Transcriptomics and metabolomics @Medicinal Plant Genomic Resources (S. O'Connor's group)

Web Link http://www.phytometasyn.ca/

Transcriptomics for medicinal plants (V. De Luca's group)

Web Link http://atted.jp/

Analysis of co-regulated genes. Several plant species are included.

Web Link http://aranet.mpimp-golm.mpg.de/

A platform of web-tools dedicated to visualization and analysis of transcriptomic co-expression networks.

Web Link Consensus transcriptome assembly

A consensus transcriptome for Catharanthus roseus based on the reuse of data from MPGR, PhytoMetaSyn and Cathacyc. Click here to download.

Web Link Arabidopsis expression matrix

A microarray-based expression matrix. Click here to download (be careful, 1.5 Go).

This matrix relies on GPL198 Affymetrix plateform (see GEO Omnibus). Data were normalized with the R 'affy' package function 'justRMA'. More than 9,000 samples are included. To decompress, type 'tar -jxf Ath_matrix.tar.bz2' on Linux.